on your htaccess use this,
RewriteEngine On
RewriteBase /root_folder_name/
RewriteCond %{REQUEST_URI} ^system.*
RewriteCond $1 !^(index\.php|images|js|uploads|css|robots\.txt)
RewriteRule ^(.*)$ /index.php/$1 [L]
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^(.*)$ index.php/$1 [L]
Hope this helps.