> I don't know why @NephiBalinski deleted his answer, but here it is just for reference, since I thought it was useful. It basically uses a mix of my second snippet and what @Mulan ended up coming up with.
                        
                        
                        
                        ---
                        
                        
                        
                        ## 1. The React Context way
                        
                        
                        
                        One way to solve this is using React Context. Here is the revised and updated code using React Context:
                        
                        
                        
                        <!-- begin snippet: js hide: false console: true babel: true -->
                        
                        
                        
                        <!-- language: lang-js -->
                        
                        
                        
                            const FootnotesContext = React.createContext(null);
                        
                        
                        
                            function FootnotesProvider({ children }) {
                        
                              const [footnotes, setFootnotes] = React.useState([]);
                        
                              const footnotesRef = React.useRef([]);
                        
                        
                        
                              function addFootnote(html) {
                        
                                footnotesRef.current = [...footnotesRef.current, html];
                        
                                setFootnotes([...footnotesRef.current, ]);
                        
                              }
                        
                        
                        
                              function totalFootnotes() {
                        
                                return footnotes.length;
                        
                              }
                        
                        
                        
                              return (
                        
                                <FootnotesContext.Provider value={{ footnotes, addFootnote, totalFootnotes,  }}>
                        
                                  {children}
                        
                                </FootnotesContext.Provider>
                        
                              );
                        
                            }
                        
                        
                        
                            function useFootnotes() {
                        
                              const context = React.useContext(FootnotesContext);
                        
                        
                        
                              if (!context) throw new Error('`useFootnotes` must be used within a `FootnotesProvider`.');
                        
                        
                        
                              return context;
                        
                            }
                        
                        
                        
                            function Article() {
                        
                              return (
                        
                                <FootnotesProvider>
                        
                                  <article>
                        
                                    <p>
                        
                                      The <FootNote html="Footnote 1" /> article content here <FootNote html="Footnote 2" />.
                        
                                    </p>
                        
                        
                        
                                    <hr />
                        
                        
                        
                                    <FootNotesContainer />
                        
                                  </article>
                        
                                </FootnotesProvider>
                        
                              );
                        
                            }
                        
                        
                        
                            function FootNotesContainer() {
                        
                              const { footnotes } = useFootnotes();
                        
                        
                        
                              return (
                        
                                <div id="footnotes-container">
                        
                                  <h2>Footnotes</h2>
                        
                                  <h3>Total Footnotes: {footnotes.length}</h3>
                        
                        
                        
                                  {footnotes.map((f, i) => (
                        
                                    <div className="footnote" key={i}>
                        
                                      <a href={`#footnote-sup-${i + 1}`} id={`footnote-${i}`}>
                        
                                        {i + 1}
                        
                                      </a>:
                        
                                      <p>{f}</p>
                        
                                    </div>
                        
                                  ))}
                        
                                </div>
                        
                              );
                        
                            }
                        
                        
                        
                            function FootNote({ html }) {
                        
                              const { footnotes, addFootnote, totalFootnotes } = useFootnotes();
                        
                              // const footnoteRef = React.useRef(null);
                        
                              const [index, setIndex] = React.useState(0)
                        
                        
                        
                              React.useEffect(() => {
                        
                                addFootnote(html);
                        
                              }, []);
                        
                        
                        
                              React.useEffect(() => {
                        
                                setIndex(footnotes.indexOf(html) + 1)
                        
                              }, [footnotes])
                        
                        
                        
                              return (
                        
                                <sup 
                        
                                  className="footnote-sup" 
                        
                                  // ref={ref => footnoteRef.current = ref}
                        
                                >
                        
                                  <a
                        
                                    href={`#footnote-${index}`}
                        
                                    id={`footnote-sup-${index}`}
                        
                                  >
                        
                                    {index}
                        
                                  </a>
                        
                                </sup>
                        
                              )
                        
                            }
                        
                        
                        
                            ReactDOM.createRoot(document.getElementById("root")).render(<Article />);
                        
                        
                        
                        <!-- language: lang-css -->
                        
                        
                        
                            .footnote {
                        
                              display: flex;
                        
                              gap: 4px;
                        
                              align-items: center;
                        
                            }
                        
                        
                        
                        <!-- language: lang-html -->
                        
                        
                        
                            <script src="https://cdnjs.cloudflare.com/ajax/libs/react/18.2.0/umd/react.production.min.js"></script>
                        
                            <script src="https://cdnjs.cloudflare.com/ajax/libs/react-dom/18.2.0/umd/react-dom.production.min.js"></script>
                        
                        
                        
                            <div id="root"></div>
                        
                        
                        
                        <!-- end snippet -->
                        
                        
                        
                        ### Key changes
                        
                        
                        
                        - We added a footnotesRef to ensures that footnotes are added sequentially.
                        
                        - We restructured the FootNote component to correct render footnote numbering.
                        
                        - We corrected the links in FootNotesContainer.
                        
                        - We didn't use DOM manipulation!
                        
                        
                        
                        This should fix the footnotes issue.
                        
                        
                        
                        ## 2. The generator way (not recommended)
                        
                        
                        
                        Another approach is using ES6 generator functions. Here is an example of a basic generator function:
                        
                        
                        
                        ```js
                        
                        function* genId() {
                        
                            var index = 0;
                        
                            while (true)
                        
                                yield index++;
                        
                            }
                        
                        }
                        
                        
                        
                        let gen = genId();
                        
                        
                        
                        console.log(gen.next().value); // 0
                        
                        console.log(gen.next().value); // 1
                        
                        console.log(gen.next().value); // 2
                        
                        ```
                        
                        
                        
                        Here is the revised and updated code:
                        
                        
                        
                        <!-- begin snippet: js hide: false console: true babel: false -->
                        
                        
                        
                        <!-- language: lang-js -->
                        
                        
                        
                            function Article() {
                        
                              return (
                        
                                <article>
                        
                                  <p>The<FootNote html="Footnote 1" /> article content here<FootNote html="Footnote 2" />.</p>
                        
                                  <FootNotesContainer />
                        
                                </article>
                        
                              );
                        
                            }
                        
                        
                        
                            function FootNotesContainer() {
                        
                              return (
                        
                                <div id='footnotes-container'>
                        
                                  <h2>Footnotes</h2>
                        
                                </div>
                        
                              );
                        
                            }
                        
                        
                        
                            function* generateId() {
                        
                              let idCounter = 1;
                        
                              while (true) {
                        
                                yield idCounter++;
                        
                              }
                        
                            }
                        
                        
                        
                            const gen = generateId();
                        
                        
                        
                            function useFootnoteId() {
                        
                              const [id, setId] = React.useState(0);
                        
                        
                        
                              React.useEffect(() => {
                        
                                setId(gen.next().value);
                        
                              }, [gen]);
                        
                        
                        
                              return id;
                        
                            }
                        
                        
                        
                            function FootNote({ html }) {
                        
                              const footNoteLink = useFootnoteId();
                        
                        
                        
                        
                        
                        <!-- language: lang-html -->
                        
                        
                        
                            <script src="https://cdnjs.cloudflare.com/ajax/libs/react/18.2.0/umd/react.production.min.js"></script>
                        
                            <script src="https://cdnjs.cloudflare.com/ajax/libs/react-dom/18.2.0/umd/react-dom.production.min.js"></script>
                        
                        
                        
                            <script src="https://cdn.jsdelivr.net/npm/regenerator-runtime@0.14.1/runtime.min.js"></script>
                        
                        
                        
                            <div id="root"></div>
                        
                        
                        
                        <!-- end snippet -->
                        
                        
                        
                        ### Key changes
                        
                        
                        
                        - We no longer use previousFootnotes.length to calculate what footNoteLink is. Instead we use useFootnoteId and generateId functions.
                        
                            - Note: We've removed DOM reads, so actions like deleting footnotes may require extra steps.
                        
                        - We implemented a cleanup function in FootNotesContainer to avoid unnecessary footnote creation due to excessive re-renders.
                        
                        
                        
                        Now footnotes should work the way you want them to.
                        
                
             
            
                
                    
                        That's [*property spread notation*][1]. It was added in ES2018 (spread for arrays/iterables was earlier, ES2015), but it's been supported in React projects for a long time via transpilation (as "[JSX spread attributes][2]" even though you could do it elsewhere, too, not just attributes).
                        
                        
                        
                        `{...this.props}` *spreads out* the "own" enumerable properties in `props` as discrete properties on the `Modal` element you're creating. For instance, if `this.props` contained `a: 1` and `b: 2`, then
                        
                        
                        
                            <Modal {...this.props} title='Modal heading' animation={false}>
                        
                        
                        
                        would be the same as
                        
                        
                        
                            <Modal a={this.props.a} b={this.props.b} title='Modal heading' animation={false}>
                        
                        
                        
                        But it's dynamic, so whatever "own" properties are in `props` are included.
                        
                        
                        
                        Since `children` is an "own" property in `props`, spread will include it. So if the component where this appears had child elements, they'll be passed on to `Modal`. Putting child elements between the opening tag and closing tags is just syntactic sugar — the good kind — for putting a `children` property in the opening tag. Example:
                        
                        
                        
                        <!-- begin snippet: js hide: true console: true babel: true -->
                        
                        
                        
                        <!-- language: lang-js -->
                        
                        
                        
                            class Example extends React.Component {
                        
                              render() {
                        
                                const { className, children } = this.props;
                        
                                return (
                        
                                  <div className={className}>
                        
                                  {children}
                        
                                  </div>
                        
                                );
                        
                              }
                        
                            }
                        
                            ReactDOM.render(
                        
                              [
                        
                                <Example className="first">
                        
                                  <span>Child in first</span>
                        
                                </Example>,
                        
                                <Example className="second" children={<span>Child in second</span>} />
                        
                              ],
                        
                              document.getElementById("root")
                        
                            );
                        
                        
                        
                        <!-- language: lang-css -->
                        
                        
                        
                            .first {
                        
                              color: green;
                        
                            }
                        
                            .second {
                        
                              color: blue;
                        
                            }
                        
                        
                        
                        <!-- language: lang-html -->
                        
                        
                        
                            <div id="root"></div>
                        
                        
                        
                            <script src="https://cdnjs.cloudflare.com/ajax/libs/react/16.6.3/umd/react.production.min.js"></script>
                        
                            <script src="https://cdnjs.cloudflare.com/ajax/libs/react-dom/16.6.3/umd/react-dom.production.min.js"></script>
                        
                        
                        
                        <!-- end snippet -->
                        
                        
                        
                        Spread notation is handy not only for that use case, but for creating a new object with most (or all) of the properties of an existing object — which comes up a lot when you're updating state, since you can't modify state directly:
                        
                        
                        
                            this.setState(prevState => {
                        
                                return {foo: {...prevState.foo, a: "updated"}};
                        
                            });
                        
                        
                        
                        That replaces `this.state.foo` with a new object with all the same properties as `foo` except the `a` property, which becomes `"updated"`:
                        
                        
                        
                        <!-- begin snippet: js hide: true console: true babel: false -->
                        
                        
                        
                        <!-- language: lang-js -->
                        
                        
                        
                            const obj = {
                        
                              foo: {
                        
                                a: 1,
                        
                                b: 2,
                        
                                c: 3
                        
                              }
                        
                            };
                        
                            console.log("original", obj.foo);
                        
                            // Creates a NEW object and assigns it to `obj.foo`
                        
                            obj.foo = {...obj.foo, a: "updated"};
                        
                            console.log("updated", obj.foo);
                        
                        
                        
                        
                        
                        <!-- language: lang-css -->
                        
                        
                        
                            .as-console-wrapper {
                        
                              max-height: 100% !important;
                        
                            }
                        
                        
                        
                        <!-- end snippet -->
                        
                        
                        
                        
                        
                          [1]: https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Operators/Spread_syntax
                        
                          [2]: https://reactjs.org/docs/jsx-in-depth.html#spread-attributes